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Articles (147)
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1

Poplar as a feedstock for biofuels: A review of compositional characteristics

Poulomi Sannigrahi, Arthur J. Ragauskas, Gerald A. Tuskan

Journal:

Biofuels, Bioproducts and Biorefining

Année:

2010

Langue:

english

Fichier:

PDF, 346 KB

english, 2010

2

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

Bonito, Gregory, Reynolds, Hannah, Robeson, Michael S., Nelson, Jessica, Hodkinson, Brendan P., Tuskan, Gerald, Schadt, Christopher W., Vilgalys, Rytas

Journal:

Molecular Ecology

Année:

2014

Langue:

english

Fichier:

PDF, 931 KB

english, 2014

3

Functional Genomics of Drought Tolerance in Bioenergy Crops

Yin, Hengfu, Chen, Chun Ju, Yang, Jun, Weston, David J., Chen, Jin-Gui, Muchero, Wellington, Ye, Ning, Tschaplinski, Timothy J., Wullschleger, Stan D., Cheng, Zong-Ming (Max), Tuskan, Gerald A., Yang,

Journal:

Critical Reviews in Plant Sciences

Année:

2014

Langue:

english

Fichier:

PDF, 422 KB

english, 2014

4

Newly identified helper bacteria stimulate ectomycorrhizal formation in Populus

LabbÃ©, Jessy L., Weston, David J., Dunkirk, Nora, Pelletier, Dale A., Tuskan, Gerald A.

Journal:

Frontiers in Plant Science

Année:

2014

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2014

5

A Suggestion of Converting Protein Intrinsic Disorder to Structural Entropy Using Shannon’s Information Theory

Guo, Hao-Bo, Ma, Yue, Tuskan, Gerald, Qin, Hong, Yang, Xiaohan, Guo, Hong

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2019

6

Accelerating Climate Resilient Plant Breeding by Applying Next-Generation Artificial Intelligence

Harfouche, Antoine L., Jacobson, Daniel A., Kainer, David, Romero, Jonathon C., Harfouche, Antoine H., Scarascia Mugnozza, Giuseppe, Moshelion, Menachem, Tuskan, Gerald A., Keurentjes, Joost J.B., Alt

Journal:

Trends in Biotechnology

Année:

2019

Fichier:

PDF, 3.51 MB

2019

7

CRISPR/Cas9-mediated Targeted Mutagenesis for Functional Genomics Research of Crassulacean Acid Metabolism Plants

Liu, Degao, Chen, Mei, Mendoza, Brian, Cheng, Hua, Hu, Rongbin, Li, Linling, Trinh, Cong T, Tuskan, Gerald A, Yang, Xiaohan

Journal:

Journal of Experimental Botany

Année:

2019

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2019

8

CRISPR/Cas9-mediated Targeted Mutagenesis for Functional Genomics Research of Crassulacean Acid Metabolism Plants

Liu, Degao, Chen, Mei, Mendoza, Brian, Cheng, Hua, Hu, Rongbin, Li, Linling, Trinh, Cong T, Tuskan, Gerald A, Yang, Xiaohan

Journal:

Journal of Experimental Botany

Année:

2019

Fichier:

PDF, 1.63 MB

2019

9

Comparative genomics can provide new insights into the evolutionary mechanisms and gene function in CAM plants

Yang, Xiaohan, Liu, Degao, Tschaplinski, Timothy J, Tuskan, Gerald A, Williams, David

Journal:

Journal of Experimental Botany

Année:

2019

Fichier:

PDF, 288 KB

2019

10

AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

Shahryary, Yadollah, Symeonidi, Aikaterini, Hazarika, Rashmi R., Denkena, Johanna, Mubeen, Talha, Hofmeister, Brigitte, van Gurp, Thomas, ColomÃ©-TatchÃ©, Maria, Verhoeven, Koen J.F., Tuskan, Gerald,

Journal:

Année:

2020

Fichier:

PDF, 1.73 MB

2020

11

Report on the Forest Trees Workshop at the Plant and Animal Genome Conference

Christophe Plomion, Janice Cooke, Tom Richardson, John Mackay, Gerald Tuskan

Journal:

Comparative and Functional Genomics

Année:

2003

Langue:

english

Fichier:

PDF, 121 KB

english, 2003

12

Genomic aspects of research involving polyploid plants

Xiaohan Yang, Chu-Yu Ye, Zong-Ming Cheng, Timothy J. Tschaplinski, Stan D. Wullschleger, Weilun Yin, Xinli Xia, Gerald A. Tuskan

Journal:

Plant Cell, Tissue and Organ Culture

Année:

2011

Langue:

english

Fichier:

PDF, 399 KB

english, 2011

13

The genome of Eucalyptus grandis

Myburg, Alexander A., Grattapaglia, Dario, Tuskan, Gerald A., Hellsten, Uffe, Hayes, Richard D., Grimwood, Jane, Jenkins, Jerry, Lindquist, Erika, Tice, Hope, Bauer, Diane, Goodstein, David M., Dubcha

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 7.91 MB

english, 2014

14

Plant-Derived Terpenes: A Feedstock for Specialty Biofuels

Mewalal, Ritesh, Rai, Durgesh K., Kainer, David, Chen, Feng, Külheim, Carsten, Peter, Gary F., Tuskan, Gerald A.

Journal:

Trends in Biotechnology

Année:

2016

Langue:

english

Fichier:

PDF, 3.52 MB

english, 2016

15

The unexpected malleability of lignin

Tuskan, Gerald A.

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 686 KB

english, 2019

16

High Throughput Screening Technologies in Biomass Characterization

Decker, Stephen R., Harman-Ware, Anne E., Happs, Renee M., Wolfrum, Edward J., Tuskan, Gerald A., Kainer, David, Oguntimein, Gbekeloluwa B., Rodriguez, Miguel, Weighill, Deborah, Jones, Piet, Jacobson

Journal:

Frontiers in Energy Research

Année:

2018

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2018

17

Mechanisms of cadmium toxicity and tolerance in Populus

Induri, Brahma Reddy, DiFazio, Stephen, Ellis, Danielle, Slavov, Gancho, Yin, Tong-Ming, Tuskan, Gerald

Journal:

Bioentrepreneur

Année:

2010

Langue:

english

Fichier:

PDF, 10.32 MB

english, 2010

18

Mechanisms of cadmium toxicity and tolerance in Populus

Induri, Brahma Reddy, DiFazio, Stephen, Ellis, Danielle, Slavov, Gancho, Yin, Tong-Ming, Tuskan, Gerald

Journal:

Bioentrepreneur

Année:

2010

Fichier:

PDF, 10.32 MB

2010

19

An outbreak of Septoria canker caused by Sphaerulina musiva on Populus trichocarpa in eastern Oregon

Sondreli, Kelsey Liann, KeriÃ¶, Susanna, Frost, Kenneth, Muchero, Wellington, Chen, Jin-Gui, Haiby, Kathy, Gantz, Carlos, Tuskan, Gerald, LeBoldus, Jared M.

Journal:

Année:

2020

Fichier:

PDF, 657 KB

2020

20

Genetic variation and spatial structure in sugar maple (Acer saccharum Marsh.) and implications for predicted global-scale environmental change

L.E.E. E. Gunter, Gerald A. Tuskan, Carla A. Gunderson, R.I.chard J. Norby

Journal:

Global Change Biology

Année:

2000

Langue:

english

Fichier:

PDF, 150 KB

english, 2000

21

Genetic variation in postfire aspen seedlings in Yellowstone National Park

Michael T. Stevens, Monica G. Turner, Gerald A. Tuskan, William H. Romme, Lee E. Gunter3, Donald M. Waller

Journal:

Molecular Ecology

Année:

1999

Langue:

english

Fichier:

PDF, 535 KB

english, 1999

22

Genetic relatedness and female spatial organization in a solitary carnivore, the raccoon, Procyon lotor

Shyamala Ratnayeke, Gerald A. Tuskan, Michael R. Pelton

Journal:

Molecular Ecology

Année:

2002

Langue:

english

Fichier:

PDF, 245 KB

english, 2002

23

TheEucalyptus grandisGenome Project: Genome and transcriptome resources for comparative analysis of woody plant biology

Alexander Myburg, Dario Grattapaglia, Gerald Tuskan, Jerry Jenkins, Jeremy Schmutz, Eshchar Mizrachi, Charles Hefer, Georgios Pappas, Lieven Sterck, Yves Van De Peer, Richard Hayes, Daniel Rokhsar

Journal:

BMC Proceedings

Année:

2011

Langue:

english

Fichier:

PDF, 97 KB

english, 2011

24

Populusresequencing: towards genome-wide association studies

Gerald Tuskan, Gancho Slavov, Steve DiFazio, Wellington Muchero, Ranjan Pryia, Wendy Schackwitz, Joel Martin, Daniel Rokhsar, Robert Sykes, Mark Davis, Michael Studer, Charles Wyman

Journal:

BMC Proceedings

Année:

2011

Langue:

english

Fichier:

PDF, 75 KB

english, 2011

25

Inferring the evolutionary history ofPopulus trichocarpafrom whole genome resequencing data

Stephen DiFazio, Gancho Slavov, Eli Rodgers-Melnick, Joel Martin, Wendy Schackwitz, Ranjan Priya, Gerald Tuskan

Journal:

BMC Proceedings

Année:

2011

Langue:

english

Fichier:

PDF, 79 KB

english, 2011

26

Genetic dissection of transcript, metabolite, growth and wood property traits in an F2 pseudo-backcross pedigree ofEucalyptus grandis x E. urophylla

Maria Magdalena van Dyk, Anand R K Kullan, Eshchar Mizrachi, Charles A Hefer, L’Zanne Jansen van Rensburg, Timothy J Tschaplinski, Katherine C Cushman, Nancy E Engle, Gerald A Tuskan, Nicoletta Jones,

Journal:

BMC Proceedings

Année:

2011

Langue:

english

Fichier:

PDF, 85 KB

english, 2011

27

Within tree variability of lignin composition inPopulus

Robert Sykes, Bob Kodrzycki, Gerald Tuskan, Kirk Foutz, Mark Davis

Journal:

Wood Science and Technology

Année:

2008

Langue:

english

Fichier:

PDF, 316 KB

english, 2008

28

Challenges of the utilization of wood polymers: how can they be overcome?

Yunqiao Pu, Matyas Kosa, Udaya C. Kalluri, Gerald A. Tuskan, Arthur J. Ragauskas

Journal:

Applied Microbiology and Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 634 KB

english, 2011

29

China–U.S. workshop on biotechnology of bioenergy plants

C. Neal Stewart, Lee Shugart, Gong-She Liu, Jie Zhuang, Yongqing Ma, Gerald A. Tuskan, Richard Meilan, Randall W. Gentry, Gary S. Sayler

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 117 KB

english, 2010

30

Characterization of microsatellites in the coding regions of thePopulusgenome

Shuxian Li, Tongming Yin, Mingxiu Wang, Gerald A. Tuskan

Journal:

Molecular Breeding

Année:

2011

Langue:

english

Fichier:

PDF, 415 KB

english, 2011

31

Micropropagation ofPopulus trichocarpa‘Nisqually-1’: the genotype deriving thePopulusreference genome

Byung-guk Kang, Lori Osburn, Dean Kopsell, Gerald A. Tuskan, Zong-Ming Cheng

Journal:

Plant Cell, Tissue and Organ Culture

Année:

2009

Langue:

english

Fichier:

PDF, 256 KB

english, 2009

32

Polymix breeding with paternity analysis inPopulus: a test for differential reproductive success (DRS) among pollen donors

Nicholas Wheeler, Peggy Payne, Valerie Hipkins, Robert Saich, Stephen Kenny, Gerald Tuskan

Journal:

Tree Genetics & Genomes

Année:

2006

Langue:

english

Fichier:

PDF, 120 KB

english, 2006

33

Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoidesandPopulus trichocarpa

Jessy Labbé, Véronique Jorge, Annegret Kohler, Patrice Vion, Benoît Marçais, Catherine Bastien, Gerald A. Tuskan, Francis Martin, François Le Tacon

Journal:

Tree Genetics & Genomes

Année:

2011

Langue:

english

Fichier:

PDF, 241 KB

english, 2011

34

Evolution and divergence in the coding and promoter regions of thePopulusgene family encoding xyloglucan endotransglycosylase/hydrolases

Xia Ye, Suhua Yuan, Hong Guo, Feng Chen, Gerald A. Tuskan, Zong-Ming Cheng

Journal:

Tree Genetics & Genomes

Année:

2012

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2012

35

Bioinformatics-Based Identification of Candidate Genes from QTLs Associated with Cell Wall Traits inPopulus

Priya Ranjan, Tongming Yin, Xinye Zhang, Udaya C. Kalluri, Xiaohan Yang, Sara Jawdy, Gerald A. Tuskan

Journal:

BioEnergy Research

Année:

2010

Langue:

english

Fichier:

PDF, 375 KB

english, 2010

36

A microarray-based genotyping and genetic mapping approach for highly heterozygous outcrossing species enables localization of a large fraction of the unassembled Populus trichocarpa genome sequence

Derek R. Drost, Evandro Novaes, Carolina Boaventura-Novaes, Catherine I. Benedict, Ryan S. Brown, Tongming Yin, Gerald A. Tuskan, Matias Kirst

Journal:

The Plant Journal

Année:

2009

Langue:

english

Fichier:

PDF, 4.05 MB

english, 2009

37

Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors

Sergei A. Filichkin, Stephen P. DiFazio, Amy M. Brunner, John M. Davis, Zamin K. Yang, Udaya C. Kalluri, Renee S. Arias, Elizabeth Etherington, Gerald A. Tuskan, Steven H. Strauss

Journal:

Plant Biotechnology Journal

Année:

2007

Langue:

english

Fichier:

PDF, 267 KB

english, 2007

38

Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms

Tania Quesada, Zhen Li, Christopher Dervinis, Yao Li, Philip N. Bocock, Gerald A. Tuskan, George Casella, John. M. Davis, Matias Kirst

Journal:

New Phytologist

Année:

2008

Langue:

english

Fichier:

PDF, 683 KB

english, 2008

39

Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar

Aloïs Bresson, Véronique Jorge, Arnaud Dowkiw, Vanina Guerin, Isabelle Bourgait, Gerald A. Tuskan, Jeremy Schmutz, Boulos Chalhoub, Catherine Bastien, Patricia Faivre Rampant

Journal:

New Phytologist

Année:

2011

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2011

40

Variation of S/G ratio and lignin content in aPopulusfamily influences the release of xylose by dilute acid hydrolysis

Brian H. Davison, Sadie R. Drescher, Gerald A. Tuskan, Mark F. Davis, Nhuan P. Nghiem

Journal:

Applied Biochemistry and Biotechnology

Année:

2006

Langue:

english

Fichier:

PDF, 214 KB

english, 2006

41

Two high-throughput techniques for determining wood properties as part of a molecular genetics analysis of hybrid poplar and loblolly pine

Gerald Tuskan, Darrell West, Harvey D. Bradshaw, David Neale, Mitch Sewell, Nick Wheeler, Bob Megraw, Keith Jech, Art Wiselogel, Robert Evans, Carolyn Elam, Mark Davis, Ron Dinus

Journal:

Applied Biochemistry and Biotechnology

Année:

1999

Langue:

english

Fichier:

PDF, 113 KB

english, 1999

42

The obscure events contributing to the evolution of an incipient sex chromosome inPopulus: a retrospective working hypothesis

Gerald A. Tuskan, Steve DiFazio, Patricia Faivre-Rampant, Muriel Gaudet, Antoine Harfouche, Véronique Jorge, Jessy L. Labbé, Priya Ranjan, Maurizio Sabatti, Gancho Slavov, Nathaniel Street, Timothy J.

Journal:

Tree Genetics & Genomes

Année:

2012

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2012

43

MicroSyn: A user friendly tool for detection of microsynteny in a gene family

Bin Cai, Xiaohan Yang, Gerald A Tuskan, Zong-Ming Cheng

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2011

44

Annotation and comparative analysis of the glycoside hydrolase genes inBrachypodium distachyon

Ludmila Tyler, Jennifer N Bragg, Jiajie Wu, Xiaohan Yang, Gerald A Tuskan, John P Vogel

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 4.48 MB

english, 2010

45

Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding

Steven G Ralph, Hye Jung E Chun, Dawn Cooper, Robert Kirkpatrick, Natalia Kolosova, Lee Gunter, Gerald A Tuskan, Carl J Douglas, Robert A Holt, Steven JM Jones, Marco A Marra, Jörg Bohlmann

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 566 KB

english, 2008

46

Genome-wide analysis ofAux/IAAandARFgene families inPopulus trichocarpa

Udaya C Kalluri, Stephen P DiFazio, Amy M Brunner, Gerald A Tuskan

Journal:

BMC Plant Biology

Année:

2007

Langue:

english

Fichier:

PDF, 432 KB

english, 2007

47

Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics

Xiaohan Yang, Chu-Yu Ye, Anjali Bisaria, Gerald A. Tuskan, Udaya C. Kalluri

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2011

48

Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis

Chu-Yu Ye, Ting Li, Gerald A. Tuskan, Timothy J. Tschaplinski, Xiaohan Yang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2011

49

Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus

Xiaohan Yang, Sara Jawdy, Timothy J. Tschaplinski, Gerald A. Tuskan

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 1003 KB

english, 2009

50

Initial characterization of shade avoidance response suggests functional diversity between Populus phytochrome B genes

Abhijit A. Karve, Sara S. Jawdy, Lee E. Gunter, Sara M. Allen, Xiaohan Yang, Gerald A. Tuskan, Stan D. Wullschleger, David J. Weston

Journal:

New Phytologist

Année:

2012

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2012